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1

Annotated regions of significance of SELDI-TOF-MS spectra for detecting protein biomarkers

Chuen Seng Tan, Alexander Ploner, Andreas Quandt, Janne Lehtiö, Maria Pernemalm, Rolf Lewensohn, Yudi Pawitan

Journal:

Year:

2006

Language:

english

File:

PDF, 453 KB

english, 2006

2

Affinity prefractionation for MS-based plasma proteomics

Maria Pernemalm, Rolf Lewensohn, Janne Lehtiö

Journal:

Year:

2009

Language:

english

File:

PDF, 241 KB

english, 2009

3

Use of narrow-range peptide IEF to improve detection of lung adenocarcinoma markers in plasma and pleural effusion

Maria Pernemalm, Luigi De Petris, Hanna Eriksson, Eva Brandén, Hirsh Koyi, Lena Kanter, Rolf Lewensohn, Janne Lehtiö

Journal:

Year:

2009

Language:

english

File:

PDF, 374 KB

english, 2009

4

A novel method for sample preparation of fresh lung cancer tissue for proteomics analysis by tumor cell enrichment and removal of blood contaminants

Luigi De Petris, Maria Pernemalm, Göran Elmberger, Per Bergman, Lotta Orre, Rolf Lewensohn, Janne Lehtiö

Journal:

Proteome Science

Year:

2010

Language:

english

File:

PDF, 2.37 MB

english, 2010

5

Tumor expression of S100A6 correlates with survival of patients with stage I non-small-cell lung cancer

De Petris, Luigi, Orre, Lukas M., Kanter, Lena, Pernemalm, Maria, Koyi, Hirsh, Lewensohn, Rolf, Lehtiö, Janne

Journal:

Year:

2009

Language:

english

File:

PDF, 750 KB

english, 2009

6

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

Andrey Alexeyenko, Woojoo Lee, Maria Pernemalm, Justin Guegan, Philippe Dessen, Vladimir Lazar, Janne Lehtiö, Yudi Pawitan

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 517 KB

english, 2012

7

A Novel Prefractionation Method Combining Protein and Peptide Isoelectric Focusing in Immobilized pH Gradient Strips

Pernemalm, Maria, Lehtiö, Janne

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.37 MB

english, 2013

8

Evaluation of Three Principally Different Intact Protein Prefractionation Methods for Plasma Biomarker Discovery

Pernemalm, Maria, Orre, Lukas M., Lengqvist, Johan, Wikström, Pernilla, Lewensohn, Rolf, Lehtiö, Janne

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.50 MB

english, 2008

9

Quantitative Proteomics Profiling of Primary Lung Adenocarcinoma Tumors Reveals Functional Perturbations in Tumor Metabolism

Pernemalm, Maria, De Petris, Luigi, Branca, Rui M., Forshed, Jenny, Kanter, Lena, Soria, Jean-Charles, Girard, Philippe, Validire, Pierre, Pawitan, Yudi, van den Oord, Joost, Lazar, Vladimir, Påhlman,

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 435 KB

english, 2013

10

The role of the tumor-microenvironment in lung cancer-metastasis and its relationship to potential therapeutic targets

Wood, Steven L., Pernemalm, Maria, Crosbie, Philip A., Whetton, Anthony D.

Journal:

Cancer Treatment Reviews

Year:

2014

Language:

english

File:

PDF, 926 KB

english, 2014

11

References for both letter and reply

Wood, Steven L., Pernemalm, Maria, Crosbie, Philip A., Whetton, Anthony D.

Journal:

Physiotherapy (Elsevier Science)

Year:

1993

Language:

english

File:

PDF, 349 KB

english, 1993

12

Proteomic Data Analysis Workflow for Discovery of Candidate Biomarker Peaks Predictive of Clinical Outcome for Patients with Acute Myeloid Leukemia †

Forshed, Jenny, Pernemalm, Maria, Tan, Chuen Seng, Lindberg, Marita, Kanter, Lena, Pawitan, Yudi, Lewensohn, Rolf, Stenke, Leif, Lehtiö, Janne

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.05 MB

english, 2008

13

Mass spectrometry-based plasma proteomics: state of the art and future outlook

Pernemalm, Maria, Lehtiö, Janne

Journal:

Expert Review of Proteomics

Year:

2014

Language:

english

File:

PDF, 437 KB

english, 2014

14

Molecular histology of lung cancer: From targets to treatments

Wood, Steven L., Pernemalm, Maria, Crosbie, Philip A., Whetton, Anthony D.

Journal:

Cancer Treatment Reviews

Year:

2015

Language:

english

File:

PDF, 2.34 MB

english, 2015

15

Discovery and Validation of Predictive Biomarkers of Survival for Non-small Cell Lung Cancer Patients Undergoing Radical Radiotherapy: Two Proteins With Predictive Value

Walker, Michael J., Zhou, Cong, Backen, Alison, Pernemalm, Maria, Williamson, Andrew J.K., Priest, Lynsey J.C., Koh, Pek, Faivre-Finn, Corinne, Blackhall, Fiona H., Dive, Caroline, Whetton, Anthony D.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

16

ERK and AKT phosphorylation status in lung cancer and emphysema using nanocapillary isoelectric focusing

Crosbie, Philip A J, Crosbie, Emma J, Aspinall-O'Dea, Mark, Walker, Michael, Harrison, Rebecca, Pernemalm, Maria, Shah, Rajesh, Joseph, Leena, Booton, Richard, Pierce, Andrew, Whetton, Anthony D

Journal:

BMJ Open Respiratory Research

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

17

Protein Z: A putative novel biomarker for early detection of ovarian cancer

Russell, Matthew R., Walker, Michael J., Williamson, Andrew J. K., Gentry-Maharaj, Aleksandra, Ryan, Andy, Kalsi, Jatinderpal, Skates, Steven, D'Amato, Alfonsina, Dive, Caroline, Pernemalm, Maria, Hum

Journal:

International Journal of Cancer

Year:

2016

Language:

english

File:

PDF, 406 KB

english, 2016

18

Silencing FLI or targeting CD13/ANPEP lead to dephosphorylation of EPHA2, a mediator of BRAF inhibitor resistance, and induce growth arrest or apoptosis in melanoma cells

Azimi, Alireza, Tuominen, Rainer, Costa Svedman, Fernanda, Caramuta, Stefano, Pernemalm, Maria, Frostvik Stolt, Marianne, Kanter, Lena, Kharaziha, Pedram, Lehtiö, Janne, Hertzman Johansson, Carolina,

Journal:

Cell Death and Disease

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

19

Identifying and Assessing Interesting Subgroups in a Heterogeneous Population

Lee, Woojoo, Alexeyenko, Andrey, Pernemalm, Maria, Guegan, Justine, Dessen, Philippe, Lazar, Vladimir, Lehtiö, Janne, Pawitan, Yudi

Journal:

BioMed Research International

Year:

2015

Language:

english

File:

PDF, 2.06 MB

english, 2015

20

Ultrasensitive immunoprofiling of plasma extracellular vesicles identifies syndecan-1 as a potential tool for minimally invasive diagnosis of glioma

Indira Chandran, Vineesh, Welinder, Charlotte, Månsson, Ann-Sofie, Offer, Svenja, Freyhult, Eva, Pernemalm, Maria, Lund, Sigrid M, Pedersen, Shona, Lehtiö, Janne, Marko-Varga, Gyorgy, Johansson, Maria

Journal:

Clinical Cancer Research

Year:

2019

File:

PDF, 6.93 MB

2019

21

The viral protein corona directs viral pathogenesis and amyloid aggregation

Ezzat, Kariem, Pernemalm, Maria, Pålsson, Sandra, Roberts, Thomas C., Järver, Peter, Dondalska, Aleksandra, Bestas, Burcu, Sobkowiak, Michal J., Levänen, Bettina, Sköld, Magnus, Thompson, Elizabeth A.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 4.23 MB

english, 2019

22

The viral protein corona directs viral pathogenesis and amyloid aggregation

Ezzat, Kariem, Pernemalm, Maria, Pålsson, Sandra, Roberts, Thomas C., Järver, Peter, Dondalska, Aleksandra, Bestas, Burcu, Sobkowiak, Michal J., Levänen, Bettina, Sköld, Magnus, Thompson, Elizabeth A.

Journal:

Nature Communications

Year:

2019

File:

PDF, 4.23 MB

2019

23

Identification of a Biomarker Panel for Early Detection of Lung Cancer Patients

Geary, Bethany, Walker, Michael J., Snow, Joseph T., Lee, Dave C.H., Pernemalm, Maria, Maleki-Dizaji, Saeedeh, Azadbakht, Narges, Apostolidou, Sophia, Barnes, Julie, Krysiak, Piotr, Shah, Rajesh, Boot

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 1.11 MB

english, 2019

24

Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma

Rad Pour, Soudabeh, Morikawa, Hiromasa, Kiani, Narsis A., Gomez-Cabrero, David, Hayes, Alistair, Zheng, Xiaozhong, Pernemalm, Maria, LehtiÃ¶, Janne, Mole, Damian J., Hansson, Johan, Eriksson, Hanna, T

Journal:

Frontiers in Oncology

Year:

2020

File:

PDF, 942 KB

2020

25

B7-06: Mass Spectrometry Profiling of Low Molecular Weight Platelet Proteome for the Detection of Lung Cancer Specific Biomarkers

De Petris, Luigi, Pernemalm, Maria, BrandÃ¨n, Eva, Koyi, Hirsh, Forshed, Jenny, Sundelin, Birgitta, Lewensohn, Rolf, LehtiÃ¶, Janne

Journal:

Journal of Thoracic Oncology

Year:

2007

File:

PDF, 512 KB

2007

26

In-depth plasma proteomics reveals increase in circulating PD-1 during anti-PD-1 immunotherapy in patients with metastatic cutaneous melanoma

BabaÄiÄ, Haris, LehtiÃ¶, Janne, Pico de CoaÃ±a, Yago, Pernemalm, Maria, Eriksson, Hanna

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2020

File:

PDF, 6.00 MB

2020

27

High throughput proteomics of breast cancer interstitial fluid: identification of tumor subtypeâspecific serologically relevant biomarkers

Terkelsen, Thilde, Pernemalm, Maria, Gromov, Pavel, BÃ¸rresenâDale, AnnaâLise, Krogh, Anders, Haakensen, Vilde D., LethiÃ¶, Janne, Papaleo, Elena, Gromova, Irina

Journal:

Molecular Oncology

Year:

2020

File:

PDF, 3.97 MB

2020

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